Projects supported by the Ministry of Education, Youth and Sport of the Czech Republic
•  LM2018099 Large Research Infrastructures: CENAKVA - South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses (2019 – 2022, responsible leader: Prof. Dipl. - Ing. Otomar Linhart, D.Sc.)
•  C15-2021 Analysis of the potential of virtual mobilities and the possibilities of their development at universities (2021, responsible leader: dipl. Ing. Michal Hojdekr, MBA)
•  C29-2021 Crisis preparedness of universities (PRVOK) (2021, responsible leader: dipl. Ing. Michal Hojdekr, MBA)
 
Project supported from the Operational programme Research, Development and Education
•  CZ.02.2.69/0.0/0.0/16_018/0002616, Development of the research oriented study programmes at the FFPW USB (2017 – 2022, responsible leader: Assoc. Prof. Dipl. - Ing. Vladimír Žlábek, Ph.D.)
•  CZ.02.2.69/0.0/0.0/16_014/0000628, Development of Technology Transfer Centre at the University of South Bohemia (2017 – 2021, responsible leader for the FFPW USB: dipl. Ing. Michal Hojdekr, MBA)
•  CZ.02.2.69/0.0/0.0/16_015/0002348, Development of USB – ESF (06/2017 – 12/2022, responsible leader for a part solved at the FFPW USB: Dipl.-Ing. Michal Hojdekr, MBA)
•  CZ.02.1.01./0.0 /0.0/16_025/0007370 Reproductive and genetic procedures for preserving fish biodiversity and aquaculture (01/2018 - 12/2021, responsible leader Prof. Dipl.-Ing. Martin Flajšhans, Dr.rer.agr.)
•  CZ.02.2.69/0.0/0.0/16_028/0006192, Development of JU - Capacities for R&D, (01/2018–12/2021, responsible leaders at the FFPW USB: Assoc. prof. Dipl. - Ing. Vladimír Žlábek, Ph.D.; Dipl.-Ing. Michal Hojdekr, MBA)
•  CZ.02.1.01/0.0/0.0/16_019/0000869, Sustainable production of healthy fish in various aquaculture systems – PROFISH (2019-2023, responsible leader for the FFPW USB: MVDr. Veronika Piačková, Ph.D.)
•  CZ.02.2.69/0.0/0.0/18_053/0016975, Development of the USB – International Mobilities II (1/2020 – 12/2022, responsible leader: Assoc. Prof. Dipl.-Ing. Vladimír Žlábek, Ph.D.)
 
Institucional plan USB 2019 - 2020
•  No. 25 Education of the Region in the Field of Fisheries and Water Protection and Promotion of Studies at the JU (2019 – 06/2021, responsible leader assoc. prof. Jan Mráz, Ph.D.)
•  No. 26 Support for the Creation of Foreign Language Studies in the LMS Moodle (2019 – 06/2021, responsible leader assoc. prof. Martin Kocour, Ph.D.)
•  No. 35 Summer School with Creative Engagement of Students from FFPW USB (2019 – 06/2021, responsible leader: assoc. prof. Vladimír Žlábek, Ph.D.)
 
Institucional plan USB 2021
•  No. 16 International mobilities of the FFPW USB students 2021 (2021, responsible leader: Assoc. Prof. Dipl.-Ing. Vladimír Žlábek, Ph.D.)
•  No. 17 Foreign business trips of the FFPW USB employees in 2021 and arrivals of foreign lecturers (2021, responsible leader: Assoc. Prof. Dipl.-Ing. Vladimír Žlábek, Ph.D.)
•  No. 34 Support system of the prevention of burnout syndrome and support for the mental health of employees and students of the FFPW USB (2021, responsible leader PaedDr. Jiří Koleček)
•  No. 41 Popularization of research and applied outputs of the FFPW USB (2021 responsible leader: Dipl.-Ing. Petr Císař, Ph.D.)
•  No. 48 Support of efficient drinking water management at the FFPW USB (2021, responsible leader prof. dipl.-Ing. Pavel Kozák, Ph.D.)
 
Projects supported by the Ministry of Agriculture of the Czech Republic
 
Projects of National Agency for Agricultural Research
•  QK1710310 Utilization of new biotechnological approaches under Czech aquaculture with the aim to reach effective, high-quality and environmentally friendly fish production (2017 – 2021, responsible leader: Assoc. Prof. Dipl. - Ing. Tomáš Policar, Ph.D.)
•  QK1710114 New viral diseases of common carp - diagnosis and prevention (2017 – 2021, responsible leader: MVDr. Veronika Piačková, Ph.D.)
•  QK1810221 Using of microparticles as carriers of hormonally active substances in artificial reproduction of fish (2018-2021, responsible leader: Mgr. Peter Podhorec, Ph.D.)
•  QK1810296 The use of alternative components and innovative techniques in fish nutrition (2018-2022, responsible leader: Ing. Vlastimil Stejskal, Ph.D.)
•  QK1810095 Determination of nitrogen factors for selected species of freshwater fish as indicators of the fish component content of "fresh" fish and products from freshwater fish. (2018-2022, responsible leader: dr. hab. Ing. Josef Velíšek, Ph.D.)
•  QK1820354 Technical and technological inovation of intensive aquaculture based on new knowledge for future effective and stable fish production (2018-2020, responsible leader: doc. Ing. Tomáš Policar, Ph.D.)
•  QK1920102 Automation and objectivization of fish predators monitoring (2019-2021, responsible leader: Dipl.-Ing. Petr Císař, Ph.D.)
•  QK1910282 Options for mitigation of the impacts of extreme hydrological events in small catchments with respect to the demands of sustainable agriculture and pond aquaculture (1/2019 – 12/2023,  responsible leader for the FFPW USB: dr hab. Dipl.-Ing. Josef Velíšek, Ph.D.)
•  QK1910428 In vitro conservation of genetic resources of common carp and creation of isogenic lines using transplantation of germ cells (2019-2023, responsible leader: Dipl.-Ing. Vojtěch Kašpar, Ph.D.)
•  QK1910430 Innovation of technological elements in carp farming in order to maximize utilization of high potential of selection programs in conditions of pond management (2019-2023, responsible leader: Assoc. Prof. Dipl.-Ing. Martin Kocour, Ph.D.)
•  QK1920326 Aquaculture of rheophilous fish (2019-2021, responsible leader: MSc. Peter Podhorec, Ph.D.)
•  QK21010141 Management of gametes and reproduction in the protection of genetic resources and the breeding program of common carp in the conditions of aquaculture in the Czech Republic (2021–2025, responsible leader: Prof. Otomar Linhart)
•  QK21010131 Optimization of the management in carp ponds with 1-year production cycle in terms of co-feeding methods and mass balance (2021–2025, responsible leader: Lukáš Veselý, Ph.D.)
•  QK21020080 The fate of selected micropollutants, which occur in treated water and sludge from wastewater treatment plants, in soil (2021–2023, responsible leader for the FFPW USB: Assoc. Prof. Roman Grabic)
•  QK21010113 Spectrum extension of medicinal products in aquaculture in the Czech Republic and evaluation of their residues in fish meat (2021–2025, responsible leader for the FFPW USB: dr hab. Ing. Josef Velíšek)
 
 Other grants supported by the Ministry of Agriculture of the Czech Republic
•  National programme for conservation and utilization of genetic resources of farm animals – Maintenance of genetic resources in fish (responsible leader: Prof. Dipl.-Ing. Martin Flajšhans, Dr.rer.agr.)
•  Subsidiary programme 2.A.e.1a): Maintenance and improving of genetic quality of farm animals and plants, Controls of performance – fish (responsible leader: Prof. Dipl.-Ing. Martin Flajšhans, Dr.rer.agr.)
OP Fishery
•  CZ.10.2.101/2.1/0.0/18_013/0000787 Optimization of pond aquaculture management - suppression of negative influence of stone moroco (6/2019 – 3/ 2021, responsible leader Assoc. Prof. Dipl.-Ing. Jan Mráz, Ph.D., project partner – Blatenská ryba, spol. s r.o.)
•  CZ.10.2.101/2.1/0.0/18_013/0000789 Optimization of procedures to reduce the loss of intracellular water after thawing in fish products (6/2019 – 3/ 2021, responsible leader Assoc. Prof. Dipl.-Ing. Jan Mráz, Ph.D., project partner – Rybářství Chlumec nad Cidlinou, a.s.)
•  CZ.10.2.101/2.1/0.0/18_013/0000792 Verification of the possibility of improving the welfare of fish when catching a pond (9/2019 – 12/ 2020, responsible leader Dipl.-Ing. Ján Regenda, Ph.D., project partner – ŠTIČÍ LÍHEŇ – ESOX, spol s r.o.)
•  CZ.10.2.101/2.1/0.0/18_013/0000793 Adaptation and breeding of largemouth bass in intensive aquaculture conditions using RAS (7/2019 – 12/ 2020, responsible leader Assoc. Prof. Dipl.-Ing. Tomáš Policar, Ph.D., project partner – NDCon s.r.o.)
•  CZ.10.5.109/5.2/4.0/19_014/0000886 Methodology III (12/2019 – 9/2021, responsible leader Assoc. Prof. Dipl.-Ing. Tomáš Policar, Ph.D.)
•  CZ.10.5.109/5.2/4.0/19_014/0000887 Methodology IV (12/2019 – 9/2021, responsible leader Prof. MVDr. Zdeňka Svobodová, DrSc.)
•  CZ.10.5.109/5.2/4.0/19_014/0000889 Methodology V (12/2019 – 9/2021, responsible leader Dipl.-Ing. Roman Franěk)
•  CZ.10.5.109/5.2/4.0/19_014/0000893 Technology II (12/2019 – 9/2021, responsible leader Dipl.-Ing. Roman Franěk)
•  CZ.10.5.109/5.2/4.0/19_014/0000894 Technology III (12/2019 – 9/2021, responsible leader Dipl.-Ing. Antonín Kouba, Ph.D.)
•  CZ.10.5.109/5.2/4.0/19_014/0000895 Technology IV (12/2019 – 9/2021, responsible leader MSc. Yanes-Roca Carlos, Ph.D.)
•  CZ.10.5.109/5.2/4.0/19_014/0000897 Technology V (12/2019 – 9/2021, responsible leader Dipl.-Ing. Vlastimil Stejskal, Ph.D.)
•  CZ.10.5.109/5.2/4.0/19_014/0000898 Technology VI (12/2019 – 9/2021, responsible leader MSc. Peter Podhorec, Ph.D.)
•  CZ.10.2.101/2.1/0.0/19_016/0000983 Protective baths of fish in risky stages of carp farming (Cyprinus carpio L.) (3/2020 – 12/ 2021, responsible leader MVDr. Eliška Zusková, Ph.D., project partner – Rybářství Lnáře, s.r.o.)
•  CZ.10.2.101/2.1/0.0/19_016/0000985 Optimization of aquaponic farm technology to increase fish production and improve water quality (5/2020 – 1/ 2022, responsible leader Assoc. Prof. Dipl.-Ing. Jan Mráz, Ph.D., project partner – Aquaponic Park s.r.o.)
•  CZ.10.2.101/2.1/0.0/19_016/0000986 Development of fish products and recipes from seasonally available fish (6/2020 – 2/ 2022, responsible leader Assoc. Prof. Dipl.-Ing. Jan Mráz, Ph.D., project partner – ŠTIČÍ LÍHEŇ-ESOX, spol. s r.o.)
•  CZ.10.5.109/5.2/4.0/20_017/0001090 Annual conference (9/2020 – 4/2021 responsible leader Dipl.-Ing. Josef Příborský)
•  CZ.10.5.109/5.2/4.0/20_017/0001091 Methodology XIII (10/2020 – 7/2022 responsible leader Dipl.-Ing. Roman Franěk, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001092 Methodology XII (10/2020 – 7/2022 responsible leader M.Sc. Peter Podhorec, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001093 Technology VII (10/2020 – 7/2022 responsible leader M.Sc. Peter Podhorec, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001094 Methodology XI (10/2020 – 7/2022 responsible leader Dipl.-Ing. Vojtěch Kašpar, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001095 Methodology X (10/2020 – 7/2022 responsible leader M.Sc. Peter Podhorec, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001096 Methodology IX (10/2020 – 7/2022 responsible leader M.Sc. Peter Podhorec, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001097 Methodology VII (10/2020 – 7/2022 responsible leader Veronika Piačková, DVM, Ph.D.)
•  CZ.10.5.109/5.2/4.0/20_017/0001098 Methodology VI (10/2020 – 7/2022 responsible leader Assoc. Prof. Dipl.-Ing. Martin Kocour, Ph.D.)
 
Projects supported by the Ministry of Culture of the Czech Republic
Program to support applied research and experimental development of national and cultural identity (NACI III)
 
•  DG18P02OVV057 The cultural tradition of Czech fishery in the light of its use in tourism and landscape development (2018 – 2022, responsible leader for the FFPW USB: Assoc. Prof. Dipl.-Ing. Jan Mráz, Ph.D.)
 
Projects supported by the Ministry of Industry and Trade of the Czech Republic
 
Operational Programme Enterprise and Innovation for Competitiveness
 •  CZ.01.1.02/0.0/0.0/16_084/0010345 Installation of closed circuits on fish sheds, water retention in the countryside and minimization of pollutant production and reuse of nutrients in the pond farm (2017 - 2020, responsible leader: Dipl. - Ing. Hana Kocour Kroupová, Ph.D. – phase A, Dipl. - Ing. Ján Regenda, Ph.D. – phase B)
 
 Projects supported by the Grant Agency USB
 
•  097/2019/Z New Methods and Biotechnological Procedures in Fish Reproduction and Genetics III (2019-2021, responsible leader: Assoc. Prof. Dipl.-Ing. Martin Pšenička, Ph.D.)
•  061/2019/Z Ecophysiological effects of selected environmental factors on aquatic organisms (2019-2021, responsible leader: Prof. Dipl.-Ing. Tomáš Randák, Ph.D.)
•  013/2019/Z New technologies for aquaculture monitoring with the respect to the water organism welfare (2019-2021, responsible leader: Dipl.-Ing. Petr Císař, Ph.D.)
•  122/2019/Z Sustainable aquaculture (2019-2021, responsible leader: Assoc. Prof. Dipl. Ing. Jan Mráz, Ph.D.)
•  036/2020/Z Nutritional Endoderm of sturgeon: A way towards the transition of cleavage (holoblastic–meroblastic) in ray-finned fishes (2/2020 – 1/2021, responsible leader: MSc. Muhajid Ali Shah)
•  094/2020/Z Long lasting motility of sturgeon spermatozoa: which energetic pathways are the main players? (2/2020 – 1/2021, responsible leader: MSc. Deepali Rahi)
•  020/2020/Z Growth-bioenergetics-excretion equilibria in carp under different proportions of cereals and natural prey relevant for fishponds: Scanning the whole nutrient spectrum (2/2020 – 1/2021, responsible leader: MSc. Koushik Roy)
•  037/2020/Z Epigenetic modifications and functional properties associated with common carp (Cyprinus carpio L.) sperm aging (2/2020 – 12/2021, responsible leader: MSc. Yu Cheng)
•  044/2020/Z Gene expression analysis of immune-related genes in common carp (Cyprinus carpio) strains exposed to the Carp Edema Virus (2/2020 – 1/2021, responsible leader: MSc. Ali Asghar Baloch)
•  019/2020/Z Immediate physiological response of invertebrate to low concentration of selected pesticides (2/2020 – 1/2021, responsible leader: MSc. Viktoriia Malinovska)
•  046/2020/Z Histone modifications during fish oocyte ageing (2/2020 – 1/2021, responsible leader: Swapnil Gorakh Waghmare, MSc.)
•  047/2021/Z Metabolic release of highly reactive, digested phosphorus from common carp at the start and end-of-season diets in fishponds: Unravelling the hidden threat (2/2021–1/2022, M.Sc. Koushik Roy)
•  063/2021/Z Ultrastructural and proteomic mechanisms of immune system reaction during haemolymph coagulation in crayfish (2/2021–1/2022, M.Sc. Kifayatullah)
•  024/2021/Z Fertilizing capacity and DNA damage in cryopreserved and Percoll gradient selected sterlet spermatozoa (2/2021–1/2022, M.Sc. Anatolii Sotnikov)
•  054/2021/Z Non-target approach for screening of the micropollutants in water (2/2021–1/2022, Dipl.-Ing. Petra Nováková)
•  035/2021/Z Cellular and molecular aspects of the nerve regeneration in crayfish (2/2021–1/2022, M.Sc. Golara Kor)
•  018/2021/Z Unwanted gift: bioconcentration of pharmaceutical xenobiotics in aerial stages of aquatic insects affected by municipal waste waters (2/2021–1/2022, Dipl.-Ing. Marek Let)
•  053/2021/Z Customization of integrated pest and disease management for aquaponics (2/2021–1/2022, M.Sc. Ewumi Azeez Folorunso)
•  066/2021/Z Xenobiotic and signalling role of 2-keto-3-deoxy-6-phosphogluconate on cyanobacteria (2/2021–1/2022, M.Sc. Anushree Bachhar)
•  019/2021/Z Development of gut-endoderm among vertebrates and the mechanism of endogenous nutrition in sterlet (Acipenser ruthenus) embryo: A comparative study (2/2021–1/2022, M.Sc. Mujahid Ali Shah)
 
Projects supported by the Czech Science Foundation
 
•  18-09323S Genome duplication in sturgeon evolution and impact on their biology (2018 - 6/2021, responsible leader Prof. Dipl.-Ing. Martin Flajšhans, Dr.rer.agr.)
•  18-15802S Transformace farmak v prostředí běžného recipientu vyčištěných komunálních odpadních vod (2018-2020, responsible leader: doc. Ing. Vladimír Žlábek, Ph.D.)
•  18-12465Y An investigation of guidance mechanisms of spermatozoa in freshwater fish (2018-2020, responsible leader: M.Sc. Sergii Boryshpolets, Ph.D.)
•  19-04431S Temperature driven changes in interactions and ecological roles of prominent crayfish invaders (1/2019 – 12/2021, responsible leader: Dipl.-Ing. Antonín Kouba, Ph.D.)
•  19-11140Y System of DNA damage reperation in developing sturgeon embryos (1/2019 – 12/2021, responsible leader: MSc. Ievgeniia Gazo, Ph.D.)
•  19-11313S Interspecies comparison of RNA localization within oocytes to elucidate regulation of early development and asymmetric cell division (2019-2021, responsible leader for a part solved at the FFPW USB: Assoc. Prof. Dipl.-Ing. Martin Pšenička, Ph.D.)
•  20-04676X Holistic exposure and effect potential assessment of complex chemical mixtures in the aquatic environment (1/2020 – 12/2024, responsible leader Assoc. Prof. MSc. Roman Grabic, Ph.D.)
•  20-01251S Epigenetic modifications and functional properties during fish gamete aging (1/2020 – 12/2022, responsible leader Prof. Dipl.-Ing. Otomar Linhart, DrSc.)
•  20-09951S Exciting freshwaters – complex responses of aquatic animals to psychoactive substances present in urbanized waters (1/2020 – 12/2022, responsible leader Prof. Dipl.-Ing. Tomáš Randák, Ph.D.)
•  20-16111S Understanding the effects of multiple stressors on freshwater biota: Will climate change alter the impact of chemical pollution? (01/2020 – 12/2022, main leader: Faculty of Science, responsible leader at the FFPW: Dipl.-Ing. BSc. Kateřina Grabicová, Ph.D.)
•  20-23836S Sturgeon as a unique model for evolutionary transition from holoblastic to meroblastic cleavage pattern, and for endoderm development in vertebrates (4/2020 – 12/2022, responsible leader Assoc. Prof. Dipl.-Ing. Martin Pšenička, Ph.D.)
 
International Research Projects 
HORIZON 2020
•  871108 AQUAEXCEL3.0 AQUAculture infrastructures for EXCELlence in EUropean fish research 3.0 (2020 – 2025, INRA, responsible leader for JU: Dipl. – Ing. Petr Císař, Ph.D.)
•  897949 – H2020-MSCA-IF-2019 - Role of the cardiac neural crest cells in heart development and regeneration — Heart2019 (2020 – 2023, responsible leader for FFPW USB: Assoc. Prof. Dipl.-Ing. Martin Pšenička, Ph.D.) – lead partner
 
Norway Grants 2014 - 2021
•  Strengtening of the colaboration between the University of South Bohemia in České Budějovice and COWI AS in Water Monitoring - č. 1404572019 (2020, responsible leader: dipl.-Ing. Helena Švecová, Ph.D.)
 
Program INTERREG V-A Austria – Czech Republic
•  Recycling of nutrients from agro-industrial residues through the cultivation of microalgae as fish feed – ATCZ221 (1/2020 – 12/2022, responsible leader: PaedDr. Jiří Koleček / Carlos Yanes-Roca, MSc., Ph.D.) - lead partner
•  Breakthrough Computer Vision Applications in the Micro World: Consortium of Research Organizations for Industry 4.0 - ATCZ215 (1/2020 – 12/2022, responsible leader: Prof. Dr. Dalibor Štys, CSc.) - lead partner
•  KPF-01-258 International innovations in the fields of aquatic toxicology and histology (2021, responsible leader Dipl. Biol. Christoph Steinbach, Ph.D.) – small project fund – coordination